rs28166222 SNP Detail

Summary

• ID
  rs28166222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106104526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCTCTT AACCACTGAG
  CCATCTCTGC AGCCCACAGA CAGGGCTCTT AACCTCTGAG CCATCTCTCC AGCTCCCTAA
  GTTGCTTTTG ATCATTGTGT TTATTGCAAT AATAGAAACT ATAGCAAAGA AGTACAATAT
  TCTTGGACTC TTCCTGCCCC GACTCCCATG TGTTCCCGCT GTCTTCCACT GAGCCATCTA
  Y
  AGAGTTTCTC CAATGATTTC TCTGAAATCT AATCCCTCTT CGGCACCCCC ATGCCACCAC
  TTTCTTACTC TTGACATCAT CATCTCTTAC CCAAGCTGTT GCAATAATTC TCATTTCCAA
  GCCTCTCCAA TTGAGTTAAC CACTTAATTG TTCTTCCAGA CTCTTTCAAG GCTTTACTAT
  CTCCTCTTTC AAGATAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38290256	NES09490962	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28166222					SNP	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38290256	NES09490962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106104526 () rs orientation: forward

Symbol	Name	Function Class
Gm12724	predicted gene 12724	within coordinates
Gm12729	predicted gene 12729	within coordinates
Rr596712	regulatory region 596712	419 bp distal
Rr596713	regulatory region 596713	543 bp proximal
Rr596714	regulatory region 596714	1272 bp proximal