rs28166217 SNP Detail

Summary

• ID
  rs28166217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106105431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTACCA TTGTGTATGC
  AGCGCCTTCA GAAGCCAGAA GAGAGTGTCA GCTCTCCCGG GGCTAGAGTT AACAGACAGT
  TGTGAGGCAC CACATGGAAC TGAACCTGGG TCCTCTGGAA AAGCAGCCAA TGCTCTTAAC
  CACTGAGCCA TCTCTCCAGC CCTTCTTGTT TTGACATCTT TGCCTATCCA GGTCTCTCCT
  Y
  TCTGGATTGG TTTCTCCTGA CTTTTTTCTT CCCTCAAGAC TTGGTTCAGG TGCTGTTCCC
  TCCAGGAAAT ATTGTTTGAC AGATGAACCC CTCTCTCATC AAGGTGTACA GAACCCTGGT
  TCCCATGTGA ACCTGGCAAT CTCCTTGCTG CCTTCCAGTA AGGCTAGAGC AGCTGTCTGT
  CACCTACACT CAGCTAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38290251	NES09490824	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28166217					SNP	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38290251	NES09490824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106105431 () rs orientation: forward

Symbol	Name	Function Class
Gm12724	predicted gene 12724	within coordinates
Gm12729	predicted gene 12729	within coordinates
Rr596712	regulatory region 596712	1324 bp distal
Rr596713	regulatory region 596713	within coordinates
Rr596714	regulatory region 596714	367 bp proximal