rs28165837 SNP Detail

Summary

• ID
  rs28165837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109138455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGGGCG CCTCTTTCCT
  CCCTGGTGCC CGGAACCACC GGGGAGATAA CTTTGTCCTG GGACGATCTC GACCAAAAGC
  TGTTCTCGGA GTCTGTTCTC GGAGTCTCGC CTCTTTATCA TCATCATCAT TATTAAAATG
  TTCTCTTCCT TCAGAGCCCC ATCCTCGAGG GATACATCTA AACATCACTC ACTTAGGAGA
  R
  CCTGAGTTCT CCGTTTCTGT AAAACCAAGC GTAGTCATCT CAAGACACCC AGGAGGGATG
  AGGTACCAAA CACCTGCCAG TCCCTTTCAT CTTCACTGCC CAGAAGTTTG CCTTCTCCAT
  AGCTGGGGGC TGTGTACTCC CTGGTATAAG CCCACCTCAG CCTATCAGCC TGCCCTGTGA
  TAGCTCCCTG CCATCTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
ss38278172	NES09513614	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
rs28165837					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278172	NES09513614	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109138455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	within coordinates
Eps15	epidermal growth factor receptor pathway substrate 15	Intron
Gm40225	predicted gene, 40225	1016 bp upstream
Rr398389	regulatory region 398389	948 bp downstream
Rr597299	regulatory region 597299	1127 bp distal
Rr597300	regulatory region 597300	836 bp distal
Rr597301	regulatory region 597301	489 bp distal
Rr597302	regulatory region 597302	792 bp distal
Rr597303	regulatory region 597303	within coordinates
Tssr38334	transcription start site region 38334	943 bp downstream
Tssr38335	transcription start site region 38335	932 bp downstream
Tssr38336	transcription start site region 38336	858 bp downstream