rs28165835 SNP Detail

Summary

• ID
  rs28165835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109138600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCAGA GCCCCATCCT
  CGAGGGATAC ATCTAAACAT CACTCACTTA GGAGAACCTG AGTTCTCCGT TTCTGTAAAA
  CCAAGCGTAG TCATCTCAAG ACACCCAGGA GGGATGAGGT ACCAAACACC TGCCAGTCCC
  TTTCATCTTC ACTGCCCAGA AGTTTGCCTT CTCCATAGCT GGGGGCTGTG TACTCCCTGG
  Y
  ATAAGCCCAC CTCAGCCTAT CAGCCTGCCC TGTGATAGCT CCCTGCCATC TTGTCTCCTT
  GGCCTAGATT TGCCTGTACT TATAAGGTAG GGCATGTGTT TGGGTAATAG ATTATTTCTA
  TGTTATGATA AAGAGGTTTT GAGGTGTTTC TTTCCAAGAA CTTGGAGATA AAAAAGTATT
  TTCCCCAGGA GCCAGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38278170	NES09513616	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28165835					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278170	NES09513616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109138600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	57 bp distal
Eps15	epidermal growth factor receptor pathway substrate 15	Intron
Gm40225	predicted gene, 40225	1161 bp upstream
Rr398389	regulatory region 398389	1093 bp downstream
Rr597299	regulatory region 597299	1272 bp distal
Rr597300	regulatory region 597300	981 bp distal
Rr597301	regulatory region 597301	634 bp distal
Rr597302	regulatory region 597302	937 bp distal
Rr597303	regulatory region 597303	133 bp distal
Tssr38334	transcription start site region 38334	1088 bp downstream
Tssr38335	transcription start site region 38335	1077 bp downstream
Tssr38336	transcription start site region 38336	1003 bp downstream