rs28165441 SNP Detail

Summary

• ID
  rs28165441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108614725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTACTT TGTTATTATT
  TTTCACACTG GATTCATAGA TTTTTAAATA AGGACTATGC TAAATGTAAG TGACCCATCT
  TCACTTTCAC TGCTGAGCTA GTCCCAAATT TCACACAGAA AACACTCTAT GCTACAGGAA
  ATGACAAAAT GAACTGGGAC AATGCAAATA GTAACTTCTA ACTTCTTCCA AGAACCTGAG
  R
  AAAGTGTTCC CAAACCTAAA TTCCTTTGCC ATTTTCTAAA ATGAGCTATA GACACATTTT
  TATAAGAGTT GGGTATTGTG ACGCATGTAT ATAATCCTAG CACTTGAGAT ATGCAGGTAG
  AAGGATCAGG TGTTCAAGGA TAATCTCAGC TACACAGCAA GTTCAAGATC AGCCAAAGCT
  ACATAAAAGC CTGTTTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss38280072	NES09499418	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28165441					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280072	NES09499418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108614725 () rs orientation: forward

Symbol	Name	Function Class
Gm53266	predicted gene, 53266	within coordinates
Rr597213	regulatory region 597213	1996 bp proximal
Zfyve9	zinc finger, FYVE domain containing 9	Intron