rs28165439 SNP Detail

Summary

• ID
  rs28165439
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108616202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAGTAC CTAATGTGTA
  AGCATGAATT TGAATCCCCA ACATAATAAG CTGTTCAGCT TCTATAACTG CAGCACCAAG
  AAGCAGAGGA TAGGATCCTT GGTGCTCATT GGCTAGACAG TCTAACCAAT CAGTGATCTC
  GAAATCCAAC CAACTGACTT CCACATGCAA GAACCCCCAC ATGAATATGT TGGTAGAAAT
  S
  GTATTGTGGA AACATTCTCA AACGTGTCTG GAGAGGAGGC TCAGCCAGCG GTTAAGTGCA
  CTTGCTGCTT TTCCACAAGA CCTGGGTTCA AGTCCCAGCA GCCATATAGC AATTCACAAC
  ATTTTTTAAC TCTAGTTTGA GGGAATCTGA TGCCTTCTTC TGGCCTCTGA GGACACCATT
  TAGTGTACAT ACATGCATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss38280070	NES09499294	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28165439					SNP	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280070	NES09499294	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108616202 () rs orientation: forward

Symbol	Name	Function Class
Gm53266	predicted gene, 53266	within coordinates
Rr597213	regulatory region 597213	519 bp proximal
Zfyve9	zinc finger, FYVE domain containing 9	Intron