rs28165438 SNP Detail

Summary

• ID
  rs28165438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108616631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT GAGTTTAGAT CACAGCTAAA
  R
  CACAGCCTGC AGACCCCTAG GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss38280069	NES09499285	PERLEGEN	MM_PANEL2	f	SNP			A	G	A	G	G
ss147190342	ENSMUSSNP3418882	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28165438					SNP	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280069	NES09499285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108616631 () rs orientation: forward

Symbol	Name	Function Class
Gm53266	predicted gene, 53266	within coordinates
Rr597213	regulatory region 597213	90 bp proximal
Zfyve9	zinc finger, FYVE domain containing 9	Intron