rs28165101 SNP Detail

Summary

• ID
  rs28165101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107490506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGCCAG TCAGGGAGGC
  CACCAGTAAA CACAGACCTG TGGCTCCATC ATCCCTGGGG GCTTTGCTGT GTGTGCATAC
  ACACGTCCTC TGTGTCTGTG TTCTCCCTTG CCATTTTGTG GAGCACATCT GTATGCATGT
  AGGGCTGGCC CAGGTGGTTC CAGGCATTTT GAGGATTACC CATGGCATAT GCGTGTATTC
  Y
  TATGTTGTAC TGACGTTCAC ATACCTCTCT CACATCGTTA CCTACCCTGA GACTCACATC
  TAACTCCATA GACATACATG AACATACATG CACACGCACA TGTGAGACTC ACATCTAACT
  CCACAGACAT ACATACATGA ACATACATGT ACATGTGGAG CTGCTTCAGG TTGCTGAGCT
  TGTATGTACA TGGACCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38284031	NES09513188	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28165101					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284031	NES09513188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107490506 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597028	regulatory region 597028	1488 bp proximal