rs28165089 SNP Detail

Summary

• ID
  rs28165089
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107492141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGAAGG GGCGCTGCTC
  TGCCTGCCTG CCTGGCTCCT GAGCTACTTC ACCTACCTGC CATCTGCTGG TGCTTCCCAC
  ACGGGGCAGC AAGGCCACAC CACAGGGTAC TTCCCTACCT GGAGGGCTGT CTGGTCCAGA
  GCTGCCTGCC AGGAGCTATG GCCCTCTGAC AGCCCCATGG CTGTGTCTTC CTCTCTCTCC
  M
  TAAGGTTCTC AAATCACAGA CCTCGTGTAT ATACAATGTA CAGGACCTCT TTTCCGCCGC
  CCTGCAAGTT TTATATTTTT GGTTTTACAA GAAAAACATT AAAAACTGGA AACTAGACAT
  GAAGGCTTGG TTCTACTTTG AGACCCAGAA GATCTGAGGG GAATGCAATG AAGAGCCCTG
  TGCACAAGAG GCCCTGGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38284019	NES09513079	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A		C	A	A	C		A
ss321249693	CHEV_4_107307549	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28165089					SNP	A	A	A	A	A	A	C	A	A	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284019	NES09513079	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107492141 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	mRNA-UTR
Rr597028	regulatory region 597028	126 bp distal