rs28165087 SNP Detail

Summary

• ID
  rs28165087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107492577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGTGGT CCTTACAGAC
  CCCAGGCCAG TTCCAAGGCA GCAAGCTAGG CGGAGATAGT CCCAGGGCAG AGGTACAGAG
  AGTCTGAGAG GTACTCAGAG ACAGACAAAT ACGTACATAC ATACATACTT ACATACGCAC
  CACACATACA CAGAAGGGGG GTGGGGGGGG AGAGGGGGAT GGATCATGGA GCCAGCCTTC
  Y
  TACCTTCTGC CCTCAGCCAG CTTTGGCTCT GCTGTCTAGA CAGTATGCAA GTCAAGGACA
  CCATGGGACT CAACAGCCTT GTAAAGCAAG AGGTAAAAGG CACCCCACAG ACTATCTAGG
  TGCAGAGAGC ACTGAGCCCA AGGGGAACCC ACACCCACAT GTTGCCCCAG CCTATAGAGA
  AGGCCAGTTC TGAGAACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38284017	NES09513083	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss321249695	CHEV_4_107307985	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28165087					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284017	NES09513083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107492577 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	319 bp downstream
Rr597028	regulatory region 597028	562 bp distal