rs28165083 SNP Detail

Summary

• ID
  rs28165083
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107492948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATAGAGA AGGCCAGTTC
  TGAGAACACC ATGGCCTGCC TAAATCTCCT GTCTCTGTGT CCAGCCCAGA CAACAGACCC
  CATCTAGTCT GCAGGGAGTG CCTAGAAGTG GGCTTCATGT CATTGTCACC TGAGGAAAAG
  ACGAAGGCAG GCATCCCACT CGGTAGGAGA CTGAGAGGGC TAAGTTCCCT CCTCACTCCC
  R
  CTGTACCAGC TCTCCCCGGC TTCAGAAATG CTCTGGGAAG GGTCTTCTGC CCCCTGAGCA
  GCAGCCACCA AGATACATTC CCAGCTCAGT CTGTACGGCA GAGGTGAGAG GGGAAGAGCT
  CGGTGGCCCC CTTCTTCAGA AGGGAAACTG AGGCTCCTTG GTCACCCAGC CATGCTAGAT
  GGCATACTCA GGCCTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38284013	NES09513093	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss321249698	CHEV_4_107308356	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28165083					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284013	NES09513093	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107492948 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	690 bp downstream
Rr597028	regulatory region 597028	933 bp distal