rs28164614 SNP Detail

Summary

• ID
  rs28164614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109908424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGAGCG TTTGGGGCCA
  GCTGGAAGCT CAGAGCTCGA TGACCTGCAG GGGGCGCTGC TGCACTGCGC GAGGCTTCCC
  TGCGTGTCCT CCCAAGGACA GAGGGCGGAC GGCGGTCGGC GGCGGTCGGC GCAGGGCAGT
  GGCCCAGCGA ACTCAGGCCG CGCCCACACT CACGCTGCGG GCCGAGGTCG GCGACACGGT
  Y
  TGAGGAATCG AGGGACAGGG CACGCTGTCC GACACCCTGG CTGGCCTTTA ACCGATCTCC
  AATTGTTTCG ACCGGTGCGG GAACGCAGAG GGGGTGGGGG CCGAGCTAGC GCTGGTAGTC
  TGGGCTTCAC CTGTGACCTT GAGAGGTCAT GGTCCCTCCT GGCCTTTTAT TTCTTTCTCC
  TGCGACGGGA ATTCTTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38276162	NES09488869	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28164614					SNP	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38276162	NES09488869	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109908424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14585	CpG island 14585	within coordinates
Gm69011	predicted gene, 69011	within coordinates
Rr597392	regulatory region 597392	663 bp distal
Rr597393	regulatory region 597393	50 bp distal
Rr597394	regulatory region 597394	140 bp distal
Rr597395	regulatory region 597395	within coordinates
Rr597396	regulatory region 597396	1965 bp proximal