rs28164613 SNP Detail

Summary

• ID
  rs28164613
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109908478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGCTGCA CTGCGCGAGG
  CTTCCCTGCG TGTCCTCCCA AGGACAGAGG GCGGACGGCG GTCGGCGGCG GTCGGCGCAG
  GGCAGTGGCC CAGCGAACTC AGGCCGCGCC CACACTCACG CTGCGGGCCG AGGTCGGCGA
  CACGGTCTGA GGAATCGAGG GACAGGGCAC GCTGTCCGAC ACCCTGGCTG GCCTTTAACC
  S
  ATCTCCAATT GTTTCGACCG GTGCGGGAAC GCAGAGGGGG TGGGGGCCGA GCTAGCGCTG
  GTAGTCTGGG CTTCACCTGT GACCTTGAGA GGTCATGGTC CCTCCTGGCC TTTTATTTCT
  TTCTCCTGCG ACGGGAATTC TTGAAGGTGC CTATGAGATA GATACTGCAC GTGAAAATGC
  TTCAGGAAAT GCAAAGCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38276161	NES09488871	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28164613					SNP	G	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38276161	NES09488871	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109908478 () rs orientation: forward

Symbol	Name	Function Class
Gm69011	predicted gene, 69011	within coordinates
Rr597392	regulatory region 597392	717 bp distal
Rr597393	regulatory region 597393	104 bp distal
Rr597394	regulatory region 597394	194 bp distal
Rr597395	regulatory region 597395	within coordinates
Rr597396	regulatory region 597396	1911 bp proximal