rs28164610 SNP Detail

Summary

• ID
  rs28164610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109909408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATG TTCGGAATTG GACAATGCAT
  R
  TAGTTTGATG GCTTCTGTCA TTATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38276158	NES09488878	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G	G	G	G	G		G	G	A	G		A
ss45728372	mCV24665084	ABI	CRAMUS_MOUSE	f	SNP		G	G						G
ss147199875	ENSMUSSNP6928666	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss321254809	CHEV_4_109724816	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28164610					SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38276158	NES09488878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109909408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14585	CpG island 14585	767 bp distal
Gm69011	predicted gene, 69011	within coordinates
Rr597392	regulatory region 597392	1647 bp distal
Rr597393	regulatory region 597393	1034 bp distal
Rr597394	regulatory region 597394	1124 bp distal
Rr597395	regulatory region 597395	336 bp distal
Rr597396	regulatory region 597396	981 bp proximal