rs28164609 SNP Detail

Summary

• ID
  rs28164609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109909459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGACAG GATGCTCTGC
  CCGGCTCTCC TCTTGCACAC TTAGAGCTGA GGCAGAGAGG CTGCGTGCCT TCAGAGTCAT
  GTTCCCTTTT GTGTATAACC TCTCTTGACA CCCGAGGACA TCATTTATGT TCGGAATTGG
  ACAATGCATA TAGTTTGATG GCTTCTGTCA TTATGTGTCT GGTCCTGAGT GGCCCCTCTT
  Y
  AATATAAATA CACACACGTC TCCTTCAGTT CTGTGAGACT TTTTTTTTTT CCTTTCATAA
  TCTTTCTGCT TGCTTCCTGA AGCTCCCAAG TCTGTCTCTG GCCTCTAGGA TTGATCTCTT
  GGCTTCCTTT GTCTTCCGTT TCCCTTCACC TTGGCTTTCA ATGTCTACTC CAATTTATCC
  CTTGAATTTT TGTCCTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38276157	NES09488881	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28164609					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38276157	NES09488881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109909459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14585	CpG island 14585	818 bp distal
Gm69011	predicted gene, 69011	within coordinates
Rr597392	regulatory region 597392	1698 bp distal
Rr597393	regulatory region 597393	1085 bp distal
Rr597394	regulatory region 597394	1175 bp distal
Rr597395	regulatory region 597395	387 bp distal
Rr597396	regulatory region 597396	930 bp proximal