rs28164603 SNP Detail

Summary

• ID
  rs28164603
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109909887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA GCAGTTCTTG GCATTTTTTT
  W
  AAAAGAAGTT TATATTTAAG TGTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38276151	NES09488891	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	T	T		T	T	T		T	A	T		A
ss45674859	mCV24665072	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					A
ss147199886	ENSMUSSNP5517981	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321254811	CHEV_4_109725295	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28164603					SNP	T	T	T	A	T	T	T	A	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38276151	NES09488891	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109909887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14585	CpG island 14585	1246 bp distal
Gm69011	predicted gene, 69011	within coordinates
Rr597393	regulatory region 597393	1513 bp distal
Rr597394	regulatory region 597394	1603 bp distal
Rr597395	regulatory region 597395	815 bp distal
Rr597396	regulatory region 597396	502 bp proximal