rs28163745 SNP Detail

Summary

• ID
  rs28163745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108185683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA GGCTAGATGC TGTGTAGTCA
  R
  GTTTAGGGTG CTAGGACTGG AGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss38281179	NES09501282	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A		G	G	G	A		G
ss45630114	mCV23295340	ABI	CRAMUS_MOUSE	f	SNP	G	G			A
ss147187140	ENSMUSSNP1001111	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321252425	CHEV_4_108001091	CHEVERUD	SCREENING_POP	f	SNP										G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs28163745					SNP	G	G	G	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281179	NES09501282	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108185683 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coa7	cytochrome c oxidase assembly factor 7			Intron
				Noncoding-Transcript-Variant
Rr367666	regulatory region 367666			208 bp downstream
Rr398380	regulatory region 398380			1138 bp downstream
Rr597153	regulatory region 597153			1305 bp distal
Rr597154	regulatory region 597154			336 bp distal
Tssr38289	transcription start site region 38289			306 bp downstream