rs28163725 SNP Detail

Summary

• ID
  rs28163725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108191979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGGTAG GGACTGAGGG
  ATGCTGGGGG AACCTGGAAG CCAGGTCTGC TTTGATATGT GAAATATGTA CCTCAGTCCC
  TTGTCACAGG GCCTAAAACC AAACAAACCC TAACTAAGAC ACTGGTATAG AATTTAATTT
  GTGGTCCACA CTTGCCTGGG ATGTTCAGGA ACCTCCAAGC TCTGCTTGCT GAGTGAGAAA
  K
  TAAGCATGAC AACCATCCTA GCTAAGGCTA GGATGGTTTT TAACTGTGTC CCAGTTTTAT
  CATCTGTAAA CTGGGAGAAG TAGGACCTGG ACTTAGTTGG ACTACAGATT GAGATCCTGT
  CTCAGAAGTC AAAGTAAAAC ATAATGAAAG AAGTAGTTCT AGCTCCATAG GATTGTTGTG
  AGGATAAATA CATGGATGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281159	NES09501014	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163725					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281159	NES09501014	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108191979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coa7	cytochrome c oxidase assembly factor 7			Intron
				Noncoding-Transcript-Variant
Rr597155	regulatory region 597155			1698 bp distal