rs28163678 SNP Detail

Summary

• ID
  rs28163678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108203613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCACCA AAAGGTGGCC
  AGTACACACA TGCTAACTGT GGGGGTGGAT GTGTTTGATA ACTACTAACA GACATTGTAT
  ACCTTGAATA TATACACTTC CATTGGTAAG TTTATTAGGA ATGAAATGAG AAAGAAACAA
  CAGAAGTACC CAGGTTGCCT ATACTGGATT TTCTCCTGGA ACCCCTTCCG TCTCTGGCCT
  Y
  CTGGTCTGGA AGGCTGCATG TTCCTCCAGG CTGCAGTGAT GCAGTGGCCC CTGTGTCTAC
  ACATAGCCGT CACCCATCAG AACATCCATG ACACTTGCCA TCCTCTGCAG ACCAGGTTGG
  CCTCAAATTC TGATAAGAGA TCTGCCTGCC TCTGCCTCCC AAATTGTAGG ATTAAAGGCA
  TGTACCACCA CCACCTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281112	NES09500044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163678					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281112	NES09500044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108203613 () rs orientation: forward

Symbol	Name	Function Class
Gm46889	predicted gene, 46889	within coordinates
Gm54250	predicted gene, 54250	1786 bp upstream
Rr597161	regulatory region 597161	1327 bp distal
Rr597162	regulatory region 597162	246 bp distal
Rr597163	regulatory region 597163	702 bp proximal
Rr597164	regulatory region 597164	1880 bp proximal