rs28163677 SNP Detail

Summary

• ID
  rs28163677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108203999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACCACC TGTCTGATAA
  AACATCTTTA ATAAGGCAAT ATAAAAGAAA GCATTTGGTT GGGACCCAGT TCCTGGTAAC
  ACACCTTCTC CAATAGGGCT ACACCTTTTA CTTCTTCCCA AATAGCCAAC TGGAGACCAA
  GATTTAGCTA TATGAACCTA TTGGGGCCTC TTCATTCAAA CATCCACAGC TGTCGGCTCA
  R
  CTTGCTACAT TGCCAAGGCT AGCCCTGAAT TAGTGGAATC CTTACAGTAC TAGGATTACA
  CACCACCAGC TATGTAACAA GATCCTTGAG AACTACCAAG GGCACCAGGA AGCGGTTACC
  CATGCCTTTA ATCCCAGCGG ATCTCTGTGA GTCTGAAGCC AGCCTGGTCT ACAGAGACGG
  TTCAGGACAG ACAGGGCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281111	NES09499993	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163677					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281111	NES09499993	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108203999 () rs orientation: forward

Symbol	Name	Function Class
Gm46889	predicted gene, 46889	within coordinates
Gm54250	predicted gene, 54250	1400 bp upstream
Rr597161	regulatory region 597161	1713 bp distal
Rr597162	regulatory region 597162	632 bp distal
Rr597163	regulatory region 597163	316 bp proximal
Rr597164	regulatory region 597164	1494 bp proximal
Rr597165	regulatory region 597165	1649 bp proximal