rs28163663 SNP Detail

Summary

• ID
  rs28163663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108207244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCCACA GACACTACAC
  TAGGACACCC CGCGTTTTCA ATTATATACT GGACCCTGCA AATTATGTAG TTTGTTTCTG
  TAGCTGCTGG GCTCTGGAGT GAAAGGCATC TGCTCCGGAC CTGCAGTGGT TCTGGGATCT
  GTCAGAGGCT TGTCAGTTCT GTGAGCCCAT CATTTAGGTT AATGACTGAG TCACCAACAG
  R
  CAGGAAGGAA GCTAGCCACA GCCACACCAG GCAGGTCTGG TTGCTACTGC AAATCTCTTC
  AAGATTGTAG AGATTACCAG GGAGAAGCCT GGTGCAAGAC AAATTCTGGG GATCAAACTG
  GAAACCACAG AGGAGAAATG TGTGATGTGA GGGGTCTTAG GCTCAGAAAG ACTCCCTAAT
  AGCCAAAATG TAATCACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281097	NES09499711	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163663					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281097	NES09499711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108207244 () rs orientation: forward

Symbol	Name	Function Class
Gm46889	predicted gene, 46889	within coordinates
Gm54250	predicted gene, 54250	within coordinates
Rr597164	regulatory region 597164	1597 bp distal
Rr597165	regulatory region 597165	670 bp distal
Rr597166	regulatory region 597166	within coordinates
Rr597167	regulatory region 597167	1288 bp proximal