rs28163661 SNP Detail

Summary

• ID
  rs28163661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108207337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGTGAA AGGCATCTGC
  TCCGGACCTG CAGTGGTTCT GGGATCTGTC AGAGGCTTGT CAGTTCTGTG AGCCCATCAT
  TTAGGTTAAT GACTGAGTCA CCAACAGACA GGAAGGAAGC TAGCCACAGC CACACCAGGC
  AGGTCTGGTT GCTACTGCAA ATCTCTTCAA GATTGTAGAG ATTACCAGGG AGAAGCCTGG
  Y
  GCAAGACAAA TTCTGGGGAT CAAACTGGAA ACCACAGAGG AGAAATGTGT GATGTGAGGG
  GTCTTAGGCT CAGAAAGACT CCCTAATAGC CAAAATGTAA TCACAATATG CAAATTAGAC
  CCCCAATAAA GCTGTCAAAA CGCGACTGCG ATGTTGGCAG CTGATAGAGA CAGAGCAGTT
  CCTGTGTGAG AAAGTTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281095	NES09499713	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163661					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281095	NES09499713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108207337 () rs orientation: forward

Symbol	Name	Function Class
Gm46889	predicted gene, 46889	within coordinates
Gm54250	predicted gene, 54250	within coordinates
Rr597164	regulatory region 597164	1690 bp distal
Rr597165	regulatory region 597165	763 bp distal
Rr597166	regulatory region 597166	within coordinates
Rr597167	regulatory region 597167	1195 bp proximal