rs28163389 SNP Detail

Summary

• ID
  rs28163389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107344507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTGGCC TGTTGCCTGG
  AGTGAGGGGA GTGGGGCGCA ATGCTCTGGA GGTCTGTGCA TGAGGTCAGC CACACAAGCT
  GATCTGGGTG ATGCTACCTG CCGGCATGGC TTCGTTTTTC AATATCCTCT TAGGTTTCCC
  CGAAGACCAA AGGCAAATTA GGGTGTCCCT GCCGGCTGTG GGGCATCATG GTCCCCTTAT
  Y
  TGAGGCTGAA CCAGGTACAA ACCCAAGCCT CTGATATGGG GGGGGGGTAA TGGGTGGGAT
  ACAGGCATCT ATGTCCACTC ATCCTGTCTC TCTGTGTGCT GCACGCAGGT CAGTAAACTT
  CTCTAAGCCT CATTGTAGGC GTGGGAAAGA TGGCCTAGTG ACTAAGGGTG CACTCATAGT
  GTTTCTCCAA AGGACCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38285119	NES09519700	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28163389					SNP	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285119	NES09519700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107344507 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	1906 bp proximal