rs28163386 SNP Detail

Summary

• ID
  rs28163386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107344949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT TAAGGCCACC GCATGGAGTA
  R
  CATACAGAAG GTGCTCAGAG AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss38285116	NES09519538	PERLEGEN	MM_PANEL2	f	SNP	G			A	A		A	A	A		A	A	A
ss45656351	mCV22676802	ABI	CRAMUS_MOUSE	f	SNP		G	G			A		A
ss147180954	ENSMUSSNP3494999	ENSEMBL	ENSEMBL_Sanger	f	SNP			G					A
ss321248450	CHEV_4_107160357	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs28163386					SNP	G	G	G	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285116	NES09519538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107344949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	1694 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	1464 bp proximal