rs28163385 SNP Detail

Summary

• ID
  rs28163385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107345112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCCTAG CTAGGATTAA
  GGCCACCGCA TGGAGTAACA TACAGAAGGT GCTCAGAGAG CAATGGTTGT GTGAGTGTGG
  GGATGAGAGC AGACTCAGGA AAGAGGCCAT TTGGGGAATT TTAGCTTATT GAAGTTATGT
  AGACCCCACT TCTGACCCCA GTCCAGCAAA AGTGGGGGTG TTTGAAAACC AGCTGTTGCT
  Y
  GGTTACAGGC TTTGTGCCTC TTCAGCCTGT GTGAGCTCCT GGCCTGACGC TAGCGAGCAG
  TACTGAGTTA GCAATACTAG GTCATCAGTA CTGGGTTGGT AGTACCAAGT CAGTGATACT
  ACATGCTGAC CTATTACCAT GGCCACAGTG AGGAGGGGTC TCAAAGTCTA TCTGCTTCAA
  CTCCCCCTGG CTCCTGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38285115	NES09519540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28163385					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285115	NES09519540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107345112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	1531 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	1301 bp proximal