rs28163382 SNP Detail

Summary

• ID
  rs28163382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107345506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC CTCTACTTGA GCCACTTGAG
  Y
  CTTCCCTTGC ACACCTCTTG GAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss38285112	NES09519544	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T		C	T	C	T		C	T	C
ss45614445	mCV22676790	ABI	CRAMUS_MOUSE	f	SNP		C			T		T
ss147180970	ENSMUSSNP3111089	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss321248454	CHEV_4_107160914	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs28163382					SNP	C	C	T	T	T	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285112	NES09519544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107345506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	1137 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	907 bp proximal