rs28163380 SNP Detail

Summary

• ID
  rs28163380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107345928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTTGGGA GCACAGTTAC CTGGTTTCTG TCCCCAGAGA
  CAGAACCTGA GGCACCAGGA AAGGAAATGA CTCAGGGCTA TGGTAGCTGC CAAGGGTTCT
  Y
  ACCTCCCAGG GCTGCAGGCT TGCTCACCCA GTTCCTGGGC CCTGTCTCCA TTGAGCCTCA
  CCATAGAGCA GGCAGGCCCT GAGAATTGTT CTTTTTGGCG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38285110	NES09519465	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28163380					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285110	NES09519465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107345928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	715 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	485 bp proximal