rs28163378 SNP Detail

Summary

• ID
  rs28163378
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107345999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGGTCA GACAGGTACT
  ATCTGTGCAT GCCTTGGGAG CACAGTTACC TGGTTTCTGT CCCCAGAGAC AGAACCTGAG
  GCACCAGGAA AGGAAATGAC TCAGGGCTAT GGTAGCTGCC AAGGGTTCTC ACCTCCCAGG
  GCTGCAGGCT TGCTCACCCA GTTCCTGGGC CCTGTCTCCA TTGAGCCTCA CCATAGAGCA
  K
  GCAGGCCCTG AGAATTGTTC TTTTTGGCGG TTTCCAGGGG TGTGGAAGTG TTGGTTGTGA
  CACACACTTC AGGTAGTGCT GGTCCAAGTC GCCCTGACCC AGGGACTGTG TAGTTTCTCT
  TCCCAGGGCT CCTTTCCTAC GTCCCTGCTG AGTAGCAGGC CACAAAGGCT TCGGTGTAAG
  CTTTAGAGTG TCACTGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss38285108	NES09519469	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G		G	G	G
ss321248455	CHEV_4_107161407	CHEVERUD	SCREENING_POP	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs28163378					SNP	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285108	NES09519469	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107345999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	644 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	414 bp proximal