rs28163374 SNP Detail

Summary

• ID
  rs28163374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107346336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT TTATGTGTGC CACTCTATCC
  Y
  AGCCCCTGAG CCAGGAGACA ACTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38285104	NES09519474	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C		C	C	T	C		C	C	C	C		T
ss45642514	mCV22676604	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss147180983	ENSMUSSNP3535069	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321248458	CHEV_4_107161744	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28163374					SNP	T	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285104	NES09519474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107346336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	307 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	77 bp proximal