rs28163372 SNP Detail

Summary

• ID
  rs28163372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107346572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCCTGAGGCG TACTCAGAAG
  S
  GGCCGGCTTT CCTGAGACAG GCCAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38285102	NES09519476	PERLEGEN	MM_PANEL2	f	SNP	C			G	G	G		G	G	C	G	G	G	G	G	C
ss45601494	mCV22676593	ABI	CRAMUS_MOUSE	f	SNP		C	C				G
ss147180995	ENSMUSSNP2484617	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163372					SNP	C	C	C	G	G	G	G	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285102	NES09519476	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107346572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	71 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	within coordinates