rs28163371 SNP Detail

Summary

• ID
  rs28163371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107346679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATGCCCG AGAGGCAGTC
  GGGGATTGAC GCCAGGTTCC CACCTCTCTC TCTTGGCTGC TTGGCTCACT CTCTCCTGAG
  GCGTACTCAG AAGGGGCCGG CTTTCCTGAG ACAGGCCATT GTCTTGGAGG TGGCCCTGAT
  GCCACTCAGG CACTTTCAGA GCCATAGCAT CCCAGCCCCA TTGAAAGGTT GTCTAAGCCA
  Y
  GTCGGTGATA TCACAAGAAG TATGGTGCGT CGGCCGTGGG CCGAGTTAAA AGCCGTAGAG
  CGACATGGTC CCAAGTGGAG CGTGTGATTA GGGAGACAGA GCTGATGCGG ATCCAGGCAG
  AACCAGGCTT CCACGGCGTT GGCGCCAATC GGGCTTTATA GGCAGGCAGT GGCAGGGAAC
  ACACAGCACT TGCCAGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38285101	NES09519477	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss321248461	CHEV_4_107162087	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28163371					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285101	NES09519477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107346679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	within coordinates
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	within coordinates