rs28163369 SNP Detail

Summary

• ID
  rs28163369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107346738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTCAC TCTCTCCTGA
  GGCGTACTCA GAAGGGGCCG GCTTTCCTGA GACAGGCCAT TGTCTTGGAG GTGGCCCTGA
  TGCCACTCAG GCACTTTCAG AGCCATAGCA TCCCAGCCCC ATTGAAAGGT TGTCTAAGCC
  ATGTCGGTGA TATCACAAGA AGTATGGTGC GTCGGCCGTG GGCCGAGTTA AAAGCCGTAG
  R
  GCGACATGGT CCCAAGTGGA GCGTGTGATT AGGGAGACAG AGCTGATGCG GATCCAGGCA
  GAACCAGGCT TCCACGGCGT TGGCGCCAAT CGGGCTTTAT AGGCAGGCAG TGGCAGGGAA
  CACACAGCAC TTGCCAGCTT GGGTGATAAG GCTCTGGTGC TGGACTGGCA CGCTGGGCTG
  TGTGCCTCAG CTGTGAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38285099	NES09519479	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A	G		A
ss321248464	CHEV_4_107162146	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28163369					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285099	NES09519479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107346738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	within coordinates
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	within coordinates