rs28163368 SNP Detail

Summary

• ID
  rs28163368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107346756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCGTACT CAGAAGGGGC
  CGGCTTTCCT GAGACAGGCC ATTGTCTTGG AGGTGGCCCT GATGCCACTC AGGCACTTTC
  AGAGCCATAG CATCCCAGCC CCATTGAAAG GTTGTCTAAG CCATGTCGGT GATATCACAA
  GAAGTATGGT GCGTCGGCCG TGGGCCGAGT TAAAAGCCGT AGAGCGACAT GGTCCCAAGT
  R
  GAGCGTGTGA TTAGGGAGAC AGAGCTGATG CGGATCCAGG CAGAACCAGG CTTCCACGGC
  GTTGGCGCCA ATCGGGCTTT ATAGGCAGGC AGTGGCAGGG AACACACAGC ACTTGCCAGC
  TTGGGTGATA AGGCTCTGGT GCTGGACTGG CACGCTGGGC TGTGTGCCTC AGCTGTGAGT
  GGGGACAGGG GAGGAGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38285098	NES09519480	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	G	G		G
ss321248465	CHEV_4_107162164	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28163368					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285098	NES09519480	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107346756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	within coordinates
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	within coordinates