rs28163363 SNP Detail

Summary

• ID
  rs28163363
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107347060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGCACT TGCCAGCTTG
  GGTGATAAGG CTCTGGTGCT GGACTGGCAC GCTGGGCTGT GTGCCTCAGC TGTGAGTGGG
  GACAGGGGAG GAGAACAGAA CTGCTGCAGA TCCACCCCCT CTTGCTGCCC TGGGTGCCCC
  GACCCACACT GAATCCAAGC TGCAGGGCTG CCTGGAGGGT CTGTAAGTTA AAGACTTTCA
  K
  GTGACCCTAA CACACCTACC AGGCCAGGAG GGTGTGATTT GACTTGGCGG AGTGCTGCCT
  GCTCAGCTAG AAACCTGCAG CTGAGCACCT GGCATTGCTT CTAGGCGCAC GGCTAAGTAA
  ATAGTCCAAG AAGGGGCATT CTGGGTATGA GGGGAGCAGG GTGGCTTTTC TGCAAGGGAA
  CTACAAGCCA GGGAAAGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38285093	NES09519485	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163363					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285093	NES09519485	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107347060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	140 bp distal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	109 bp distal