rs28163361 SNP Detail

Summary

• ID
  rs28163361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107347245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG CTTTTCTGCA AGGGAACTAC
  R
  AGCCAGGGAA AGCTTCCCAG AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38285091	NES09519487	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G		A	G	A		G	G	A	G		G
ss45587716	mCV22676580	ABI	CRAMUS_MOUSE	f	SNP	G					A	A
ss147181014	ENSMUSSNP562902	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						A
ss321248469	CHEV_4_107162653	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28163361					SNP	G	A	G	A	G	A	A	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285091	NES09519487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107347245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	325 bp distal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	294 bp distal