rs28163359 SNP Detail

Summary

• ID
  rs28163359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107347356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCTAGG CGCACGGCTA
  AGTAAATAGT CCAAGAAGGG GCATTCTGGG TATGAGGGGA GCAGGGTGGC TTTTCTGCAA
  GGGAACTACA AGCCAGGGAA AGCTTCCCAG AGAAGGTGAC TTTCTTGAGA GAGGTATGGA
  TGTGTAGGCA TTCACAGGAA TGTGAGAGAG CTCTGTGTAG CGGAGTGGGG CCAGACGGGC
  R
  CAGTGGTTCC ATTCTGTGCA TGGAGGATGG TGGGGCTTGG GCAGGTGGAG CATCTTAGCG
  CCAGGTGATG GAGGCCAGCT GTTCTAACTG CTCCAGCTGT TTCCCAAGAC ACCCGCACCC
  TCCCGGGAAG CTAAGGCAGC GCCTTCAGCT TCAGTCCACT TAGCAACTGG AGCAGTGAGG
  ATGCCTGGTA GGTGCATTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38285089	NES09519489	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163359					SNP	G	G	G	A	G	A	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285089	NES09519489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107347356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	436 bp distal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	405 bp distal