rs28160949 SNP Detail

Summary

• ID
  rs28160949
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107158864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACATCTAT TCTTTCCTGC CACCATGCGG GCCTTGGGGA
  GTGAACTCAG GCTGTTTCAC TTGGCTACAG ACACTTTTAC CTACTGAGCC GTTTTGCCTG
  M
  ACCTCCACAC ATGCACCACG ACACACTTGT GGAAAACTTG TCCCCACACA CATGTACATC
  TATGCATACG TGCACATAAA AATAAAATTT AAAATGTAAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss38286077	NES09493457	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs28160949					SNP	A	A	C	A	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286077	NES09493457	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107158864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596966	regulatory region 596966			1370 bp distal
Rr596967	regulatory region 596967			976 bp proximal
Rr596968	regulatory region 596968			1938 bp proximal