rs28160940 SNP Detail

Summary

• ID
  rs28160940
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107160844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGATTA TCTGTAAGAA
  ACCTTCCTGG ACTTCCGATG GGTAGCTCTA AAATGAGCCC TGTGTTTATG CCCAAAGCAT
  CCTTTGGCGT GCCAAAGGCC TGGGAGTTTC TGAAGGGCTA TAGGATGTCT TTGTAATGGA
  TCTTGATAAC CCTATTTGGA AATCCTCCCC AAAACTAACC AACACTTTGA GGCATGTGTG
  W
  ACCTGCAGGT AGGAGACAGG ACACCCTCCA GCTCTGGTTC TTGATGACCT CAGCAGCTTC
  CCCTTACACC CAGTTTCCAC ATCTGGGAAC TCACCTGCCC CTTGCCCTCT GTCCTGGGCT
  GTTCCCTGAA TTCTTGTCCT CGTTTGCCCC AGGGCTTCAG GGCTGTTAGG GTCCCCAGTG
  TCCTTCCTGC AGCCTTCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38286066	NES09493264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28160940					SNP	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286066	NES09493264	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107160844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			250 bp distal
Rr596968	regulatory region 596968			within coordinates