rs28159859 SNP Detail

Summary

• ID
  rs28159859
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102297901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCTTTC ACAATTAAAA
  CTGAGTCAAA ATTCTACAGG AATTCCCCTA AGCTGTAGAA TCGCCTCACC TGCCGATGGG
  GAGAAGCTCA AAGAGGCCCT AGCCTGAATC TTAATTTCTC TACATGTATA TTCATTTTGC
  CTTTAAAAAG AGCATTTTAA AAACAAACAA ACAAAAAACT TCAGTATATT GGAAAAAAAA
  M
  CACAAGAATA TATGAAAGGA ACTCAATATT TCCAGTAACC TGGGATTTCT CCTGAGATTC
  ACAAATTTAA TTTGATGACA AAAGAGAAGA CCTAAGTACT TCACACTTTG GTTCAATTTT
  ACTGTCATTT CACTGACGTG GAACCATGTT TGTGGAGCAC TGAAGAATGT GTTTGTTTGA
  ACCAAAAGTG GAAAGCGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38308884	NES09510565	PERLEGEN	MM_PANEL2	f	SNP	C		A	C		C	C			C	C	A
ss45673738	mCV23354926	ABI	CRAMUS_MOUSE	f	SNP	C	C	A		C	C
ss147131247	ENSMUSSNP3608529	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A			C			A
ss321233624	CHEV_4_102113309	CHEVERUD	SCREENING_POP	f	SNP								C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28159859					SNP	C	C	A	C	C	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308884	NES09510565	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102297901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596244	regulatory region 596244			821 bp distal
Rr596245	regulatory region 596245			269 bp distal