rs28159857 SNP Detail

Summary

• ID
  rs28159857
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102298014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTCTAC ATGTATATTC
  ATTTTGCCTT TAAAAAGAGC ATTTTAAAAA CAAACAAACA AAAAACTTCA GTATATTGGA
  AAAAAAACCA CAAGAATATA TGAAAGGAAC TCAATATTTC CAGTAACCTG GGATTTCTCC
  TGAGATTCAC AAATTTAATT TGATGACAAA AGAGAAGACC TAAGTACTTC ACACTTTGGT
  W
  CAATTTTACT GTCATTTCAC TGACGTGGAA CCATGTTTGT GGAGCACTGA AGAATGTGTT
  TGTTTGAACC AAAAGTGGAA AGCGAGCCAT GGAAATCAAT GCTGTTGCTC TCTTTGCAAA
  GAGTTGGGTT TTGGTTTTGT TTTCTGTTTT TAAATCAAGC TGATGACTGA TACAAAACTC
  AGTACAAGAA AAATGTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38308882	NES09510567	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28159857					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308882	NES09510567	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102298014 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596244	regulatory region 596244			934 bp distal
Rr596245	regulatory region 596245			382 bp distal