rs28159673 SNP Detail

Summary

• ID
  rs28159673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102340642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATAGAGC TTTCTTATAC
  TGCTTATATA ATGCTTGAAT CTAAAGAAGC CTAAACTTGA AATGTGTGTC CTGATCAAGG
  CAGAGACAGG AAATGCCCTA GATAAATGAC ACTGTTTATG TGTTTGTTTC TACCATTGCG
  GGTTCCCTTT TCTTCCTGAT TGTATTCTGG TTTGTGTGGT ATATTCATTT CACTTGTTAA
  R
  GCCCCCTTCA GTCTTTCTCT TGGCCATCGC TGCCCCCTTG CTCCCTTGAT CTGTGGGATG
  TATTGTGATG TCTGCCCACT AATTTTTGCT GTGACTGGGG CTGGTGTCTG GTTGGTGATT
  CACGTTTGTT CCGAAGCCGA ACATCTGTGC TGGTTGCTTT GAAACAGTGC CCCAGGGAAT
  GTGAAAGGCC CTTTGTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38308697	NES09538037	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28159673					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308697	NES09538037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102340642 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596250	regulatory region 596250			within coordinates
Rr596251	regulatory region 596251			1444 bp proximal
Rr596252	regulatory region 596252			1552 bp proximal
Rr596253	regulatory region 596253			1737 bp proximal