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rs28159673 SNP Detail
Summary
  • ID
    rs28159673
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:102340642 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTATAGAGC TTTCTTATAC
    TGCTTATATA ATGCTTGAAT CTAAAGAAGC CTAAACTTGA AATGTGTGTC CTGATCAAGG
    CAGAGACAGG AAATGCCCTA GATAAATGAC ACTGTTTATG TGTTTGTTTC TACCATTGCG
    GGTTCCCTTT TCTTCCTGAT TGTATTCTGG TTTGTGTGGT ATATTCATTT CACTTGTTAA
    R
    GCCCCCTTCA GTCTTTCTCT TGGCCATCGC TGCCCCCTTG CTCCCTTGAT CTGTGGGATG
    TATTGTGATG TCTGCCCACT AATTTTTGCT GTGACTGGGG CTGGTGTCTG GTTGGTGATT
    CACGTTTGTT CCGAAGCCGA ACATCTGTGC TGGTTGCTTT GAAACAGTGC CCCAGGGAAT
    GTGAAAGGCC CTTTGTCTCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38308697 NES09538037 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28159673 SNP A A A A A A G A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38308697 NES09538037 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:102340642 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pde4b phosphodiesterase 4B, cAMP specific Intron
Noncoding-Transcript-Variant
Rr596250 regulatory region 596250 within coordinates
Rr596251 regulatory region 596251 1444 bp proximal
Rr596252 regulatory region 596252 1552 bp proximal
Rr596253 regulatory region 596253 1737 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory