rs28159670 SNP Detail

Summary

• ID
  rs28159670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102341118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTATG GGGTTACAGG
  GTAAAGGAGA AAAAGAAAAG AAAACCAAAG AGGAAAGAGT TTGTGTGGGG AGGGATCTAG
  TGTCAGCTCA TATGGGCCCA CGTGCTTCGT AAGTGTGGCA GAGCACCCTT CCCCCAGTCT
  CACTTTCTTC TGCTACTGTT TTGTGAATGT AGCCTCTGCA CACAGGAAGG CTGATAGCAG
  R
  AAGACAAATG AGCCCTACTA GAAAACTCAT GGAAAAAAGT CTTAAGGGTT TTGCATACTT
  GGCCAGATGC TGATGTAAGT CCAGAGAGCA TTGATAGTCA TAACAGTGAG TGGCATCACA
  TGAGCACTGA CCAAAGCACT CAAGCTACAG ACTGCCTGGC ATCCCAAACA CTCACCTTTT
  GGTCTTGCCA AACTTGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38308694	NES09538040	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G		A	G	G		A
ss321233784	CHEV_4_102156526	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28159670					SNP	A	A	A	A	A	G	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308694	NES09538040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102341118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596250	regulatory region 596250			224 bp distal
Rr596251	regulatory region 596251			968 bp proximal
Rr596252	regulatory region 596252			1076 bp proximal
Rr596253	regulatory region 596253			1261 bp proximal