rs28155990 SNP Detail

Summary

• ID
  rs28155990
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103902450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACAATA ACTTTCCTTA
  TCATATTGGT ACTTCAGATT TCTGCCCATC CACTCAGGTA TCTTTCTGAC TTGAAGAGAC
  AAAATTATCT ATTAACTTTA TCAATAATAA GTACTTATTA ATTGATGTAT ATTATACTAA
  TTATAATTAA GCAATTATTA ACAACTAATC TATTAATCTA ATTAATATAC GTGATTTCTG
  M
  AGCTACACCA TCACCAAACC ACTCTGTCTG CTTTTCCCTT TGCTTTCTCC ATCTTTGTAA
  CTGACTATGT TGACTCTTCA TGGTGAGCTA GTCCATGTCA CCTTGGGTTC AAGTTTTCCG
  ATCCAGCTAG AGAGTAGCTG ACTTAACAGA GAACATACCT AGCATGCTAG CAAAGGTTCC
  TCTGTTGGTC CTCAGCACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38301914	NES09510094	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28155990					SNP	C	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38301914	NES09510094	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103902450 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab1	disabled 1			Intron
				Noncoding-Transcript-Variant
Rr596428	regulatory region 596428			1423 bp distal
Rr596429	regulatory region 596429			332 bp distal