rs28155165 SNP Detail

Summary

• ID
  rs28155165
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102970575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCAGG TGGCCCAAGC
  CTTTATTTAA TCCCAGCACT TTCAAACCAG TTCCATATCA GCCAGGGCTA CACAGGGCGA
  AAGACCCTGA TCTATAAACA CAAACAGACA TTGATACATA ACAGCAGAAA CTAGCCACGA
  GCCTAGTGAA GATTGAAAAA TGTCCTATTA GCTAACTGAA GCATTTCAAA ACTCAGTAAA
  S
  TAAGTGGTCA TTTAGATCAA AGCTGGTGAC TGGCTAGTTA ACAACTAAAG TGCCAACCGA
  CTGTTGTAAG CTATTGGAAA GCGCTTTTTC GGAGAAGCGA TGTAAGGCTG AGCACTTAAC
  TCAAGGGCAA ATGCAAGGCT CTCTCCTCAG AACTTTCAGT AAGTTCAAAG GGCGAATTAG
  CTGAGAGGAT GTTGGAAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305994	NES09519236	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28155165					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305994	NES09519236	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102970575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			1012 bp upstream
Rr596355	regulatory region 596355			280 bp distal
Rr596356	regulatory region 596356			527 bp proximal
Rr596357	regulatory region 596357			1028 bp proximal
Rr596358	regulatory region 596358			1167 bp proximal
Tssr38082	transcription start site region 38082			1007 bp upstream
Tssr38083	transcription start site region 38083			1024 bp upstream
Tssr38084	transcription start site region 38084			1084 bp upstream
Tssr38085	transcription start site region 38085			1334 bp upstream
Tssr38086	transcription start site region 38086			1398 bp upstream
Tssr38087	transcription start site region 38087			1538 bp upstream
Tssr42583	transcription start site region 42583			832 bp downstream
Tssr42584	transcription start site region 42584			844 bp downstream
Tssr42585	transcription start site region 42585			860 bp downstream
Tssr42586	transcription start site region 42586			927 bp downstream
Tssr42587	transcription start site region 42587			938 bp downstream
Tssr42588	transcription start site region 42588			979 bp downstream
Tssr42589	transcription start site region 42589			1184 bp downstream
Tssr42590	transcription start site region 42590			1434 bp downstream