rs28155164 SNP Detail

Summary

• ID
  rs28155164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102970606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCACTT TCAAACCAGT
  TCCATATCAG CCAGGGCTAC ACAGGGCGAA AGACCCTGAT CTATAAACAC AAACAGACAT
  TGATACATAA CAGCAGAAAC TAGCCACGAG CCTAGTGAAG ATTGAAAAAT GTCCTATTAG
  CTAACTGAAG CATTTCAAAA CTCAGTAAAG TAAGTGGTCA TTTAGATCAA AGCTGGTGAC
  K
  GGCTAGTTAA CAACTAAAGT GCCAACCGAC TGTTGTAAGC TATTGGAAAG CGCTTTTTCG
  GAGAAGCGAT GTAAGGCTGA GCACTTAACT CAAGGGCAAA TGCAAGGCTC TCTCCTCAGA
  ACTTTCAGTA AGTTCAAAGG GCGAATTAGC TGAGAGGATG TTGGAAGAAA AGATGTGGCT
  GCTCTGGGAA GACCGCAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38305993	NES09519237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G		G	T	T	G		T
ss321235891	CHEV_4_102786014	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28155164					SNP	T	T	T	T	T	T	T	T	G	G	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305993	NES09519237	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102970606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			488 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			981 bp upstream
Rr596355	regulatory region 596355			311 bp distal
Rr596356	regulatory region 596356			496 bp proximal
Rr596357	regulatory region 596357			997 bp proximal
Rr596358	regulatory region 596358			1136 bp proximal
Tssr38082	transcription start site region 38082			976 bp upstream
Tssr38083	transcription start site region 38083			993 bp upstream
Tssr38084	transcription start site region 38084			1053 bp upstream
Tssr38085	transcription start site region 38085			1303 bp upstream
Tssr38086	transcription start site region 38086			1367 bp upstream
Tssr38087	transcription start site region 38087			1507 bp upstream
Tssr42583	transcription start site region 42583			801 bp downstream
Tssr42584	transcription start site region 42584			813 bp downstream
Tssr42585	transcription start site region 42585			829 bp downstream
Tssr42586	transcription start site region 42586			896 bp downstream
Tssr42587	transcription start site region 42587			907 bp downstream
Tssr42588	transcription start site region 42588			948 bp downstream
Tssr42589	transcription start site region 42589			1153 bp downstream
Tssr42590	transcription start site region 42590			1403 bp downstream