rs28155162 SNP Detail

Summary

• ID
  rs28155162
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102970740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGCTAA CTGAAGCATT
  TCAAAACTCA GTAAAGTAAG TGGTCATTTA GATCAAAGCT GGTGACTGGC TAGTTAACAA
  CTAAAGTGCC AACCGACTGT TGTAAGCTAT TGGAAAGCGC TTTTTCGGAG AAGCGATGTA
  AGGCTGAGCA CTTAACTCAA GGGCAAATGC AAGGCTCTCT CCTCAGAACT TTCAGTAAGT
  W
  CAAAGGGCGA ATTAGCTGAG AGGATGTTGG AAGAAAAGAT GTGGCTGCTC TGGGAAGACC
  GCAAAACCAC TGAAATGTTC GAGCATGAAA GGGGGAATAT TTTAATGAAA ATTCAAACCA
  CTTCCAAGTT CAACGCCACA CGAGTCCACA TTATCTTTGG GCCTTTCTCC TAGCTTAGCG
  GCATGAACTA AGCAGTTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305991	NES09519239	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28155162					SNP	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305991	NES09519239	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102970740 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			354 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			847 bp upstream
Rr596355	regulatory region 596355			445 bp distal
Rr596356	regulatory region 596356			362 bp proximal
Rr596357	regulatory region 596357			863 bp proximal
Rr596358	regulatory region 596358			1002 bp proximal
Tssr38082	transcription start site region 38082			842 bp upstream
Tssr38083	transcription start site region 38083			859 bp upstream
Tssr38084	transcription start site region 38084			919 bp upstream
Tssr38085	transcription start site region 38085			1169 bp upstream
Tssr38086	transcription start site region 38086			1233 bp upstream
Tssr38087	transcription start site region 38087			1373 bp upstream
Tssr42583	transcription start site region 42583			667 bp downstream
Tssr42584	transcription start site region 42584			679 bp downstream
Tssr42585	transcription start site region 42585			695 bp downstream
Tssr42586	transcription start site region 42586			762 bp downstream
Tssr42587	transcription start site region 42587			773 bp downstream
Tssr42588	transcription start site region 42588			814 bp downstream
Tssr42589	transcription start site region 42589			1019 bp downstream
Tssr42590	transcription start site region 42590			1269 bp downstream