rs28154948 SNP Detail

Summary

• ID
  rs28154948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103045876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGCTCC AGGCCCTTCA
  GTACAGACTG TCTCTATACA CGCTTTCTGA GAGATTTCAT GCAATTGACT TGTTACATTT
  GTTGTTCCAT TCATGTCCAA CTCTGACTCC ATGATGGGGA GCTACAGATT GTCAGGAGTT
  TTAACCCAGT GCAGTTTCCC CTCAGTTCGA TGAGTCCTAC GCCACTGAAC AGAGAACAAT
  Y
  TGAACATAGC TCCAACCTTC CCTCTGTATT CCCTTCCCCT CCCTCACTCT GACAAGGGCA
  TCAGAGTGGC AAATGCCCTG TTCTTTCAAA ATGATCACAG ACCTGCCTCT CCCGGTCTGG
  CCTCTTTCAG AAAGCTGGCT CACTTTGCTA ACTGCTGAGG AATGGGAATA TCTGAGGTAT
  TCTTAAAAAT GAAAAGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38305771	NES09515397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C		T	C		T
ss321236090	CHEV_4_102861284	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28154948					SNP	T	T	T	T	T	T	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305771	NES09515397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103045876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596372	regulatory region 596372			287 bp proximal
Slc35d1	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1			Intron
				Noncoding-Transcript-Variant