rs28154946 SNP Detail

Summary

• ID
  rs28154946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103046016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACCCAGT GCAGTTTCCC
  CTCAGTTCGA TGAGTCCTAC GCCACTGAAC AGAGAACAAT TTGAACATAG CTCCAACCTT
  CCCTCTGTAT TCCCTTCCCC TCCCTCACTC TGACAAGGGC ATCAGAGTGG CAAATGCCCT
  GTTCTTTCAA AATGATCACA GACCTGCCTC TCCCGGTCTG GCCTCTTTCA GAAAGCTGGC
  Y
  CACTTTGCTA ACTGCTGAGG AATGGGAATA TCTGAGGTAT TCTTAAAAAT GAAAAGCTAG
  AACGACTAAG TCTGGCCAAT GAGGTCCCGG GTTTTGATTA GCTTTAGCAA TACCAAGTTA
  ACTGGGCTTT TCTGTCTGAG ACAAATGATT CGCCCTTAGT AAAATGCATC AAGAGGAAAA
  CACGCCTGGG GATGTCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38305769	NES09515399	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		T	T	T	T		T
ss321236091	CHEV_4_102861424	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28154946					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305769	NES09515399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103046016 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596372	regulatory region 596372			147 bp proximal
Slc35d1	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1			Intron
				Noncoding-Transcript-Variant