rs28154942 SNP Detail

Summary

• ID
  rs28154942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103046411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCACAG CTTTTAGGAG
  CCTCAGACAT AAATCCACAG GCATGTGAGG GCAACTCAGA CACAAGAAAC CCACCTTGAT
  TGGTTCCTGG CAAGCCCCAC CTCCCAAAGA AACTTAGGGC TTGGAGTGAA GAGATGTGTT
  TATCACTCTG TCACAGAAAC AGCCTCCTCC CCCTTTCTTC CTCTACAGTA ACTAATGTGT
  Y
  TAACTTTCCC CACATTCCCC AGAGCTAAGT CACCTTCAAG TAGAGCTATG CCCTTGCTAA
  GTTCTTACAA ACTGATTTAG AAATTACCAC CACATGTCAA GCTACTACGC CAGCAAGTAG
  GAATAAGGCT GAGACTTAGG CTACTGACAG ACTCTTTTAA AAATGTAATT ACTTTATTAA
  TATTGCTGTG CATAGATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305765	NES09515403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28154942					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305765	NES09515403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103046411 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596372	regulatory region 596372			within coordinates
Slc35d1	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1			Intron
				Noncoding-Transcript-Variant