rs28154931 SNP Detail

Summary

• ID
  rs28154931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103048113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCACTCA GGAAACTGAA
  CAAGACACTC AGAAACAAGA AAGGAGAACT CTACGACAAA TTTCTGATAC CTACTTCTCT
  AGGAAATTAT CTGATAAGAA TGTATTAAAG GCTTACCCCA TCACACAGGA GAGGGTGAAC
  TGCAGCAGGA ACAGGGTGTC AGCCCAGCCC TCAAACTCCA TTGCCTGTAA CACACAAGAA
  R
  GCACTGGGTT CAGAGCAGGC CCTCCAAACA GCTCTCATTC ATTCCCTGAA GTCCCTGTGT
  GCAGTTGTCA CCTCCCTGCT ACATCACTCC AAGGACTGAG AGTGATACTC AAGAGTTTCA
  AATGTTAGGG GACAGAGAGA ATACTTTAAG GGTGTGGCCA CTGACGGATG GTCCCACACC
  TATGAGTATA TGGGCAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305754	NES09515329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28154931					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305754	NES09515329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103048113 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596372	regulatory region 596372			1203 bp distal
Rr596373	regulatory region 596373			1699 bp proximal
Rr596374	regulatory region 596374			1706 bp proximal
Slc35d1	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1			Intron
				Noncoding-Transcript-Variant